Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
19 |
2.6% |
| Arg[R] |
35 |
4.7% |
| Asn[N] |
55 |
7.5% |
| Asp[D] |
43 |
5.8% |
| Cys[C] |
4 |
0.5% |
| Gln[Q] |
61 |
8.3% |
| Glu[E] |
40 |
5.4% |
| Gly[G] |
36 |
4.9% |
| His[H] |
22 |
3.0% |
| Ile[I] |
39 |
5.3% |
| Leu[L] |
65 |
8.8% |
| Lys[K] |
43 |
5.8% |
| Met[M] |
13 |
1.8% |
| Phe[F] |
24 |
3.3% |
| Pro[P] |
45 |
6.1% |
| Ser[S] |
104 |
14.1% |
| Thr[T] |
33 |
4.5% |
| Trp[W] |
7 |
0.9% |
| Tyr[Y] |
19 |
2.6% |
| Val[V] |
31 |
4.2% |
| Total Length |
738 |
|
| Instability index (II) |
65.77 |
| This classifies the protein as unstable |
|
| Carbon |
3615 |
| Hydrogen |
5691 |
| Nitrogen |
1053 |
| Oxygen |
1177 |
| Sulfur |
17 |
| Total number of atoms |
11553 |
| Formula = C3615H5691N1053O1177S17 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
67060 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
66810 M-1 cm-1 |
| assuming all Cys residues are reduced |
66810 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
67060 M-1 cm-1 |
|
|
| Codon Bias |
0.026 |
| Codon Adaptation Index |
0.124 |
| Frequency of Optimal Codons |
0.419 |
| Hydropathicity of Protein |
-0.850 |
| Aromaticity Score |
0.068 |
|
