Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
56 |
6.0% |
| Arg[R] |
31 |
3.3% |
| Asn[N] |
58 |
6.3% |
| Asp[D] |
67 |
7.2% |
| Cys[C] |
12 |
1.3% |
| Gln[Q] |
26 |
2.8% |
| Glu[E] |
68 |
7.3% |
| Gly[G] |
46 |
5.0% |
| His[H] |
24 |
2.6% |
| Ile[I] |
57 |
6.1% |
| Leu[L] |
90 |
9.7% |
| Lys[K] |
64 |
6.9% |
| Met[M] |
19 |
2.0% |
| Phe[F] |
42 |
4.5% |
| Pro[P] |
37 |
4.0% |
| Ser[S] |
85 |
9.2% |
| Thr[T] |
52 |
5.6% |
| Trp[W] |
11 |
1.2% |
| Tyr[Y] |
32 |
3.5% |
| Val[V] |
50 |
5.4% |
| Total Length |
927 |
|
| Instability index (II) |
39.31 |
| This classifies the protein as stable |
|
| Carbon |
4642 |
| Hydrogen |
7217 |
| Nitrogen |
1227 |
| Oxygen |
1451 |
| Sulfur |
31 |
| Total number of atoms |
14568 |
| Formula = C4642H7217N1227O1451S31 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
108930 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
108180 M-1 cm-1 |
| assuming all Cys residues are reduced |
108180 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
108930 M-1 cm-1 |
|
|
| Codon Bias |
0.067 |
| Codon Adaptation Index |
0.144 |
| Frequency of Optimal Codons |
0.450 |
| Hydropathicity of Protein |
-0.402 |
| Aromaticity Score |
0.092 |
|
