Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
9 |
4.6% |
| Arg[R] |
12 |
6.2% |
| Asn[N] |
12 |
6.2% |
| Asp[D] |
15 |
7.7% |
| Cys[C] |
3 |
1.5% |
| Gln[Q] |
2 |
1.0% |
| Glu[E] |
11 |
5.6% |
| Gly[G] |
6 |
3.1% |
| His[H] |
6 |
3.1% |
| Ile[I] |
9 |
4.6% |
| Leu[L] |
13 |
6.7% |
| Lys[K] |
14 |
7.2% |
| Met[M] |
9 |
4.6% |
| Phe[F] |
13 |
6.7% |
| Pro[P] |
10 |
5.1% |
| Ser[S] |
9 |
4.6% |
| Thr[T] |
16 |
8.2% |
| Trp[W] |
2 |
1.0% |
| Tyr[Y] |
10 |
5.1% |
| Val[V] |
14 |
7.2% |
| Total Length |
195 |
|
| Instability index (II) |
36.97 |
| This classifies the protein as stable |
|
| Carbon |
1030 |
| Hydrogen |
1577 |
| Nitrogen |
273 |
| Oxygen |
297 |
| Sulfur |
12 |
| Total number of atoms |
3189 |
| Formula = C1030H1577N273O297S12 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
26025 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
25900 M-1 cm-1 |
| assuming all Cys residues are reduced |
25900 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
26025 M-1 cm-1 |
|
|
| Codon Bias |
-0.004 |
| Codon Adaptation Index |
0.140 |
| Frequency of Optimal Codons |
0.418 |
| Hydropathicity of Protein |
-0.479 |
| Aromaticity Score |
0.128 |
|
