Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
103 |
6.2% |
| Arg[R] |
79 |
4.7% |
| Asn[N] |
98 |
5.9% |
| Asp[D] |
105 |
6.3% |
| Cys[C] |
24 |
1.4% |
| Gln[Q] |
65 |
3.9% |
| Glu[E] |
111 |
6.7% |
| Gly[G] |
96 |
5.8% |
| His[H] |
37 |
2.2% |
| Ile[I] |
92 |
5.5% |
| Leu[L] |
143 |
8.6% |
| Lys[K] |
130 |
7.8% |
| Met[M] |
43 |
2.6% |
| Phe[F] |
61 |
3.7% |
| Pro[P] |
64 |
3.8% |
| Ser[S] |
132 |
7.9% |
| Thr[T] |
104 |
6.2% |
| Trp[W] |
8 |
0.5% |
| Tyr[Y] |
54 |
3.2% |
| Val[V] |
115 |
6.9% |
| Total Length |
1664 |
|
| Instability index (II) |
37.65 |
| This classifies the protein as stable |
|
| Carbon |
8196 |
| Hydrogen |
13060 |
| Nitrogen |
2276 |
| Oxygen |
2550 |
| Sulfur |
67 |
| Total number of atoms |
26149 |
| Formula = C8196H13060N2276O2550S67 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
125960 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
124460 M-1 cm-1 |
| assuming all Cys residues are reduced |
124460 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
125960 M-1 cm-1 |
|
|
| Codon Bias |
0.297 |
| Codon Adaptation Index |
0.279 |
| Frequency of Optimal Codons |
0.585 |
| Hydropathicity of Protein |
-0.460 |
| Aromaticity Score |
0.074 |
|
