Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
23 |
5.3% |
| Arg[R] |
15 |
3.4% |
| Asn[N] |
22 |
5.0% |
| Asp[D] |
32 |
7.3% |
| Cys[C] |
2 |
0.5% |
| Gln[Q] |
13 |
3.0% |
| Glu[E] |
26 |
5.9% |
| Gly[G] |
28 |
6.4% |
| His[H] |
11 |
2.5% |
| Ile[I] |
28 |
6.4% |
| Leu[L] |
27 |
6.2% |
| Lys[K] |
27 |
6.2% |
| Met[M] |
4 |
0.9% |
| Phe[F] |
20 |
4.6% |
| Pro[P] |
22 |
5.0% |
| Ser[S] |
49 |
11.2% |
| Thr[T] |
37 |
8.5% |
| Trp[W] |
7 |
1.6% |
| Tyr[Y] |
14 |
3.2% |
| Val[V] |
30 |
6.9% |
| Total Length |
437 |
|
| Instability index (II) |
45.60 |
| This classifies the protein as unstable |
|
| Carbon |
2148 |
| Hydrogen |
3315 |
| Nitrogen |
573 |
| Oxygen |
689 |
| Sulfur |
6 |
| Total number of atoms |
6731 |
| Formula = C2148H3315N573O689S6 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
59485 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
59360 M-1 cm-1 |
| assuming all Cys residues are reduced |
59360 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
59485 M-1 cm-1 |
|
|
| Codon Bias |
0.305 |
| Codon Adaptation Index |
0.276 |
| Frequency of Optimal Codons |
0.594 |
| Hydropathicity of Protein |
-0.469 |
| Aromaticity Score |
0.094 |
|
