Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
36 |
8.2% |
| Arg[R] |
29 |
6.6% |
| Asn[N] |
13 |
3.0% |
| Asp[D] |
24 |
5.5% |
| Cys[C] |
3 |
0.7% |
| Gln[Q] |
12 |
2.7% |
| Glu[E] |
33 |
7.6% |
| Gly[G] |
39 |
8.9% |
| His[H] |
14 |
3.2% |
| Ile[I] |
31 |
7.1% |
| Leu[L] |
37 |
8.5% |
| Lys[K] |
22 |
5.0% |
| Met[M] |
18 |
4.1% |
| Phe[F] |
13 |
3.0% |
| Pro[P] |
19 |
4.3% |
| Ser[S] |
19 |
4.3% |
| Thr[T] |
34 |
7.8% |
| Trp[W] |
0 |
0.0% |
| Tyr[Y] |
9 |
2.1% |
| Val[V] |
32 |
7.3% |
| Total Length |
437 |
|
| Instability index (II) |
31.11 |
| This classifies the protein as stable |
|
| Carbon |
2102 |
| Hydrogen |
3411 |
| Nitrogen |
599 |
| Oxygen |
639 |
| Sulfur |
21 |
| Total number of atoms |
6772 |
| Formula = C2102H3411N599O639S21 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
13535 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
13410 M-1 cm-1 |
| assuming all Cys residues are reduced |
13410 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
13535 M-1 cm-1 |
|
|
| Codon Bias |
0.344 |
| Codon Adaptation Index |
0.291 |
| Frequency of Optimal Codons |
0.604 |
| Hydropathicity of Protein |
-0.200 |
| Aromaticity Score |
0.050 |
|
