Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
107 |
9.9% |
| Arg[R] |
34 |
3.1% |
| Asn[N] |
118 |
10.9% |
| Asp[D] |
34 |
3.1% |
| Cys[C] |
4 |
0.4% |
| Gln[Q] |
173 |
16.0% |
| Glu[E] |
37 |
3.4% |
| Gly[G] |
30 |
2.8% |
| His[H] |
13 |
1.2% |
| Ile[I] |
59 |
5.5% |
| Leu[L] |
69 |
6.4% |
| Lys[K] |
77 |
7.1% |
| Met[M] |
33 |
3.1% |
| Phe[F] |
25 |
2.3% |
| Pro[P] |
55 |
5.1% |
| Ser[S] |
88 |
8.1% |
| Thr[T] |
61 |
5.6% |
| Trp[W] |
5 |
0.5% |
| Tyr[Y] |
13 |
1.2% |
| Val[V] |
46 |
4.3% |
| Total Length |
1081 |
|
| Instability index (II) |
51.29 |
| This classifies the protein as unstable |
|
| Carbon |
5138 |
| Hydrogen |
8354 |
| Nitrogen |
1582 |
| Oxygen |
1677 |
| Sulfur |
37 |
| Total number of atoms |
16788 |
| Formula = C5138H8354N1582O1677S37 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
47120 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
46870 M-1 cm-1 |
| assuming all Cys residues are reduced |
46870 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
47120 M-1 cm-1 |
|
|
| Codon Bias |
0.154 |
| Codon Adaptation Index |
0.161 |
| Frequency of Optimal Codons |
0.506 |
| Hydropathicity of Protein |
-0.870 |
| Aromaticity Score |
0.040 |
|
