Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
33 |
4.6% |
| Arg[R] |
2 |
0.3% |
| Asn[N] |
8 |
1.1% |
| Asp[D] |
8 |
1.1% |
| Cys[C] |
11 |
1.5% |
| Gln[Q] |
17 |
2.3% |
| Glu[E] |
23 |
3.2% |
| Gly[G] |
11 |
1.5% |
| His[H] |
9 |
1.2% |
| Ile[I] |
34 |
4.7% |
| Leu[L] |
42 |
5.8% |
| Lys[K] |
10 |
1.4% |
| Met[M] |
11 |
1.5% |
| Phe[F] |
13 |
1.8% |
| Pro[P] |
31 |
4.3% |
| Ser[S] |
244 |
33.7% |
| Thr[T] |
156 |
21.5% |
| Trp[W] |
3 |
0.4% |
| Tyr[Y] |
16 |
2.2% |
| Val[V] |
43 |
5.9% |
| Total Length |
725 |
|
| Instability index (II) |
66.92 |
| This classifies the protein as unstable |
|
| Carbon |
3075 |
| Hydrogen |
4989 |
| Nitrogen |
787 |
| Oxygen |
1229 |
| Sulfur |
22 |
| Total number of atoms |
10102 |
| Formula = C3075H4989N787O1229S22 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
40965 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
40340 M-1 cm-1 |
| assuming all Cys residues are reduced |
40340 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
40965 M-1 cm-1 |
|
|
| Codon Bias |
0.155 |
| Codon Adaptation Index |
0.135 |
| Frequency of Optimal Codons |
0.496 |
| Hydropathicity of Protein |
-0.024 |
| Aromaticity Score |
0.044 |
|
