Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
36 |
5.4% |
| Arg[R] |
22 |
3.3% |
| Asn[N] |
91 |
13.5% |
| Asp[D] |
50 |
7.4% |
| Cys[C] |
0 |
0.0% |
| Gln[Q] |
25 |
3.7% |
| Glu[E] |
43 |
6.4% |
| Gly[G] |
29 |
4.3% |
| His[H] |
27 |
4.0% |
| Ile[I] |
35 |
5.2% |
| Leu[L] |
49 |
7.3% |
| Lys[K] |
44 |
6.5% |
| Met[M] |
6 |
0.9% |
| Phe[F] |
23 |
3.4% |
| Pro[P] |
30 |
4.5% |
| Ser[S] |
83 |
12.4% |
| Thr[T] |
43 |
6.4% |
| Trp[W] |
1 |
0.1% |
| Tyr[Y] |
9 |
1.3% |
| Val[V] |
26 |
3.9% |
| Total Length |
672 |
|
| Instability index (II) |
41.74 |
| This classifies the protein as unstable |
|
| Carbon |
3162 |
| Hydrogen |
4983 |
| Nitrogen |
953 |
| Oxygen |
1110 |
| Sulfur |
6 |
| Total number of atoms |
10214 |
| Formula = C3162H4983N953O1110S6 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
18910 M-1 cm-1 |
|
|
| Codon Bias |
0.002 |
| Codon Adaptation Index |
0.125 |
| Frequency of Optimal Codons |
0.418 |
| Hydropathicity of Protein |
-0.988 |
| Aromaticity Score |
0.049 |
|
