Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
26 |
4.2% |
| Arg[R] |
28 |
4.6% |
| Asn[N] |
46 |
7.5% |
| Asp[D] |
27 |
4.4% |
| Cys[C] |
14 |
2.3% |
| Gln[Q] |
27 |
4.4% |
| Glu[E] |
39 |
6.4% |
| Gly[G] |
12 |
2.0% |
| His[H] |
18 |
2.9% |
| Ile[I] |
26 |
4.2% |
| Leu[L] |
44 |
7.2% |
| Lys[K] |
34 |
5.6% |
| Met[M] |
12 |
2.0% |
| Phe[F] |
26 |
4.2% |
| Pro[P] |
43 |
7.0% |
| Ser[S] |
86 |
14.1% |
| Thr[T] |
41 |
6.7% |
| Trp[W] |
9 |
1.5% |
| Tyr[Y] |
21 |
3.4% |
| Val[V] |
33 |
5.4% |
| Total Length |
612 |
|
| Instability index (II) |
68.71 |
| This classifies the protein as unstable |
|
| Carbon |
3050 |
| Hydrogen |
4714 |
| Nitrogen |
848 |
| Oxygen |
966 |
| Sulfur |
26 |
| Total number of atoms |
9604 |
| Formula = C3050H4714N848O966S26 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
81665 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
80790 M-1 cm-1 |
| assuming all Cys residues are reduced |
80790 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
81665 M-1 cm-1 |
|
|
| Codon Bias |
0.125 |
| Codon Adaptation Index |
0.139 |
| Frequency of Optimal Codons |
0.482 |
| Hydropathicity of Protein |
-0.668 |
| Aromaticity Score |
0.092 |
|
