Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
49 |
7.1% |
| Arg[R] |
40 |
5.8% |
| Asn[N] |
34 |
4.9% |
| Asp[D] |
35 |
5.1% |
| Cys[C] |
4 |
0.6% |
| Gln[Q] |
27 |
3.9% |
| Glu[E] |
29 |
4.2% |
| Gly[G] |
41 |
5.9% |
| His[H] |
11 |
1.6% |
| Ile[I] |
56 |
8.1% |
| Leu[L] |
80 |
11.6% |
| Lys[K] |
47 |
6.8% |
| Met[M] |
15 |
2.2% |
| Phe[F] |
37 |
5.4% |
| Pro[P] |
23 |
3.3% |
| Ser[S] |
44 |
6.4% |
| Thr[T] |
46 |
6.7% |
| Trp[W] |
8 |
1.2% |
| Tyr[Y] |
16 |
2.3% |
| Val[V] |
48 |
7.0% |
| Total Length |
690 |
|
| Instability index (II) |
28.84 |
| This classifies the protein as stable |
|
| Carbon |
3512 |
| Hydrogen |
5632 |
| Nitrogen |
948 |
| Oxygen |
986 |
| Sulfur |
19 |
| Total number of atoms |
11097 |
| Formula = C3512H5632N948O986S19 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
68090 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
67840 M-1 cm-1 |
| assuming all Cys residues are reduced |
67840 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
68090 M-1 cm-1 |
|
|
| Codon Bias |
0.047 |
| Codon Adaptation Index |
0.120 |
| Frequency of Optimal Codons |
0.429 |
| Hydropathicity of Protein |
0.005 |
| Aromaticity Score |
0.088 |
|
