Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
20 |
4.3% |
| Arg[R] |
19 |
4.1% |
| Asn[N] |
23 |
5.0% |
| Asp[D] |
26 |
5.6% |
| Cys[C] |
6 |
1.3% |
| Gln[Q] |
5 |
1.1% |
| Glu[E] |
24 |
5.2% |
| Gly[G] |
37 |
8.0% |
| His[H] |
7 |
1.5% |
| Ile[I] |
34 |
7.3% |
| Leu[L] |
50 |
10.8% |
| Lys[K] |
37 |
8.0% |
| Met[M] |
7 |
1.5% |
| Phe[F] |
22 |
4.7% |
| Pro[P] |
27 |
5.8% |
| Ser[S] |
49 |
10.6% |
| Thr[T] |
23 |
5.0% |
| Trp[W] |
0 |
0.0% |
| Tyr[Y] |
17 |
3.7% |
| Val[V] |
31 |
6.7% |
| Total Length |
464 |
|
| Instability index (II) |
41.69 |
| This classifies the protein as unstable |
|
| Carbon |
2290 |
| Hydrogen |
3652 |
| Nitrogen |
600 |
| Oxygen |
682 |
| Sulfur |
13 |
| Total number of atoms |
7237 |
| Formula = C2290H3652N600O682S13 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
25705 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
25330 M-1 cm-1 |
| assuming all Cys residues are reduced |
25330 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
25705 M-1 cm-1 |
|
|
| Codon Bias |
-0.018 |
| Codon Adaptation Index |
0.107 |
| Frequency of Optimal Codons |
0.387 |
| Hydropathicity of Protein |
-0.133 |
| Aromaticity Score |
0.084 |
|
