Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
28 |
4.8% |
| Arg[R] |
22 |
3.8% |
| Asn[N] |
36 |
6.1% |
| Asp[D] |
43 |
7.3% |
| Cys[C] |
14 |
2.4% |
| Gln[Q] |
23 |
3.9% |
| Glu[E] |
30 |
5.1% |
| Gly[G] |
24 |
4.1% |
| His[H] |
17 |
2.9% |
| Ile[I] |
24 |
4.1% |
| Leu[L] |
54 |
9.2% |
| Lys[K] |
47 |
8.0% |
| Met[M] |
15 |
2.6% |
| Phe[F] |
27 |
4.6% |
| Pro[P] |
22 |
3.8% |
| Ser[S] |
56 |
9.6% |
| Thr[T] |
49 |
8.4% |
| Trp[W] |
3 |
0.5% |
| Tyr[Y] |
20 |
3.4% |
| Val[V] |
32 |
5.5% |
| Total Length |
586 |
|
| Instability index (II) |
33.01 |
| This classifies the protein as stable |
|
| Carbon |
2904 |
| Hydrogen |
4567 |
| Nitrogen |
795 |
| Oxygen |
917 |
| Sulfur |
29 |
| Total number of atoms |
9212 |
| Formula = C2904H4567N795O917S29 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
47175 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
46300 M-1 cm-1 |
| assuming all Cys residues are reduced |
46300 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
47175 M-1 cm-1 |
|
|
| Codon Bias |
0.169 |
| Codon Adaptation Index |
0.183 |
| Frequency of Optimal Codons |
0.512 |
| Hydropathicity of Protein |
-0.536 |
| Aromaticity Score |
0.085 |
|
