Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
21 |
4.8% |
| Arg[R] |
25 |
5.7% |
| Asn[N] |
28 |
6.4% |
| Asp[D] |
30 |
6.9% |
| Cys[C] |
4 |
0.9% |
| Gln[Q] |
20 |
4.6% |
| Glu[E] |
41 |
9.4% |
| Gly[G] |
23 |
5.3% |
| His[H] |
11 |
2.5% |
| Ile[I] |
23 |
5.3% |
| Leu[L] |
34 |
7.8% |
| Lys[K] |
51 |
11.7% |
| Met[M] |
9 |
2.1% |
| Phe[F] |
11 |
2.5% |
| Pro[P] |
22 |
5.0% |
| Ser[S] |
26 |
6.0% |
| Thr[T] |
18 |
4.1% |
| Trp[W] |
6 |
1.4% |
| Tyr[Y] |
11 |
2.5% |
| Val[V] |
22 |
5.0% |
| Total Length |
436 |
|
| Instability index (II) |
45.60 |
| This classifies the protein as unstable |
|
| Carbon |
2201 |
| Hydrogen |
3524 |
| Nitrogen |
638 |
| Oxygen |
682 |
| Sulfur |
13 |
| Total number of atoms |
7058 |
| Formula = C2201H3524N638O682S13 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
49640 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
49390 M-1 cm-1 |
| assuming all Cys residues are reduced |
49390 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
49640 M-1 cm-1 |
|
|
| Codon Bias |
-0.011 |
| Codon Adaptation Index |
0.125 |
| Frequency of Optimal Codons |
0.406 |
| Hydropathicity of Protein |
-1.009 |
| Aromaticity Score |
0.064 |
|
