Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
30 |
7.8% |
| Arg[R] |
10 |
2.6% |
| Asn[N] |
22 |
5.7% |
| Asp[D] |
19 |
4.9% |
| Cys[C] |
4 |
1.0% |
| Gln[Q] |
28 |
7.2% |
| Glu[E] |
16 |
4.1% |
| Gly[G] |
30 |
7.8% |
| His[H] |
4 |
1.0% |
| Ile[I] |
16 |
4.1% |
| Leu[L] |
42 |
10.9% |
| Lys[K] |
19 |
4.9% |
| Met[M] |
6 |
1.6% |
| Phe[F] |
21 |
5.4% |
| Pro[P] |
20 |
5.2% |
| Ser[S] |
37 |
9.6% |
| Thr[T] |
26 |
6.7% |
| Trp[W] |
3 |
0.8% |
| Tyr[Y] |
11 |
2.8% |
| Val[V] |
23 |
5.9% |
| Total Length |
387 |
|
| Instability index (II) |
35.05 |
| This classifies the protein as stable |
|
| Carbon |
1873 |
| Hydrogen |
2925 |
| Nitrogen |
497 |
| Oxygen |
582 |
| Sulfur |
10 |
| Total number of atoms |
5887 |
| Formula = C1873H2925N497O582S10 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
33140 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
32890 M-1 cm-1 |
| assuming all Cys residues are reduced |
32890 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
33140 M-1 cm-1 |
|
|
| Codon Bias |
0.343 |
| Codon Adaptation Index |
0.274 |
| Frequency of Optimal Codons |
0.601 |
| Hydropathicity of Protein |
-0.196 |
| Aromaticity Score |
0.090 |
|
