Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
23 |
3.8% |
| Arg[R] |
29 |
4.8% |
| Asn[N] |
30 |
4.9% |
| Asp[D] |
42 |
6.9% |
| Cys[C] |
14 |
2.3% |
| Gln[Q] |
28 |
4.6% |
| Glu[E] |
36 |
5.9% |
| Gly[G] |
16 |
2.6% |
| His[H] |
12 |
2.0% |
| Ile[I] |
38 |
6.2% |
| Leu[L] |
78 |
12.8% |
| Lys[K] |
41 |
6.7% |
| Met[M] |
16 |
2.6% |
| Phe[F] |
34 |
5.6% |
| Pro[P] |
21 |
3.5% |
| Ser[S] |
47 |
7.7% |
| Thr[T] |
31 |
5.1% |
| Trp[W] |
10 |
1.6% |
| Tyr[Y] |
30 |
4.9% |
| Val[V] |
32 |
5.3% |
| Total Length |
608 |
|
| Instability index (II) |
40.57 |
| This classifies the protein as unstable |
|
| Carbon |
3235 |
| Hydrogen |
5008 |
| Nitrogen |
828 |
| Oxygen |
931 |
| Sulfur |
30 |
| Total number of atoms |
10032 |
| Formula = C3235H5008N828O931S30 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
100575 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
99700 M-1 cm-1 |
| assuming all Cys residues are reduced |
99700 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
100575 M-1 cm-1 |
|
|
| Codon Bias |
0.030 |
| Codon Adaptation Index |
0.131 |
| Frequency of Optimal Codons |
0.428 |
| Hydropathicity of Protein |
-0.244 |
| Aromaticity Score |
0.122 |
|
