Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
41 |
8.0% |
| Arg[R] |
22 |
4.3% |
| Asn[N] |
29 |
5.7% |
| Asp[D] |
20 |
3.9% |
| Cys[C] |
0 |
0.0% |
| Gln[Q] |
15 |
2.9% |
| Glu[E] |
31 |
6.0% |
| Gly[G] |
33 |
6.4% |
| His[H] |
11 |
2.1% |
| Ile[I] |
34 |
6.6% |
| Leu[L] |
56 |
10.9% |
| Lys[K] |
43 |
8.4% |
| Met[M] |
6 |
1.2% |
| Phe[F] |
28 |
5.5% |
| Pro[P] |
26 |
5.1% |
| Ser[S] |
36 |
7.0% |
| Thr[T] |
31 |
6.0% |
| Trp[W] |
4 |
0.8% |
| Tyr[Y] |
18 |
3.5% |
| Val[V] |
29 |
5.7% |
| Total Length |
513 |
|
| Instability index (II) |
35.71 |
| This classifies the protein as stable |
|
| Carbon |
2606 |
| Hydrogen |
4112 |
| Nitrogen |
692 |
| Oxygen |
745 |
| Sulfur |
6 |
| Total number of atoms |
8161 |
| Formula = C2606H4112N692O745S6 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
48820 M-1 cm-1 |
|
|
| Codon Bias |
0.234 |
| Codon Adaptation Index |
0.190 |
| Frequency of Optimal Codons |
0.539 |
| Hydropathicity of Protein |
-0.225 |
| Aromaticity Score |
0.097 |
|
