Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
26 |
4.7% |
| Arg[R] |
26 |
4.7% |
| Asn[N] |
32 |
5.8% |
| Asp[D] |
26 |
4.7% |
| Cys[C] |
14 |
2.5% |
| Gln[Q] |
23 |
4.1% |
| Glu[E] |
40 |
7.2% |
| Gly[G] |
18 |
3.2% |
| His[H] |
11 |
2.0% |
| Ile[I] |
35 |
6.3% |
| Leu[L] |
85 |
15.3% |
| Lys[K] |
30 |
5.4% |
| Met[M] |
8 |
1.4% |
| Phe[F] |
32 |
5.8% |
| Pro[P] |
22 |
4.0% |
| Ser[S] |
44 |
7.9% |
| Thr[T] |
26 |
4.7% |
| Trp[W] |
4 |
0.7% |
| Tyr[Y] |
23 |
4.1% |
| Val[V] |
31 |
5.6% |
| Total Length |
556 |
|
| Instability index (II) |
44.94 |
| This classifies the protein as unstable |
|
| Carbon |
2905 |
| Hydrogen |
4553 |
| Nitrogen |
745 |
| Oxygen |
837 |
| Sulfur |
22 |
| Total number of atoms |
9062 |
| Formula = C2905H4553N745O837S22 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
57145 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
56270 M-1 cm-1 |
| assuming all Cys residues are reduced |
56270 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
57145 M-1 cm-1 |
|
|
| Codon Bias |
-0.015 |
| Codon Adaptation Index |
0.106 |
| Frequency of Optimal Codons |
0.390 |
| Hydropathicity of Protein |
-0.044 |
| Aromaticity Score |
0.106 |
|
