Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
12 |
2.9% |
| Arg[R] |
14 |
3.4% |
| Asn[N] |
33 |
7.9% |
| Asp[D] |
36 |
8.6% |
| Cys[C] |
4 |
1.0% |
| Gln[Q] |
26 |
6.2% |
| Glu[E] |
36 |
8.6% |
| Gly[G] |
12 |
2.9% |
| His[H] |
3 |
0.7% |
| Ile[I] |
32 |
7.7% |
| Leu[L] |
51 |
12.2% |
| Lys[K] |
43 |
10.3% |
| Met[M] |
6 |
1.4% |
| Phe[F] |
17 |
4.1% |
| Pro[P] |
5 |
1.2% |
| Ser[S] |
22 |
5.3% |
| Thr[T] |
24 |
5.8% |
| Trp[W] |
4 |
1.0% |
| Tyr[Y] |
12 |
2.9% |
| Val[V] |
25 |
6.0% |
| Total Length |
417 |
|
| Instability index (II) |
27.17 |
| This classifies the protein as stable |
|
| Carbon |
2163 |
| Hydrogen |
3467 |
| Nitrogen |
571 |
| Oxygen |
679 |
| Sulfur |
10 |
| Total number of atoms |
6890 |
| Formula = C2163H3467N571O679S10 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
40130 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
39880 M-1 cm-1 |
| assuming all Cys residues are reduced |
39880 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
40130 M-1 cm-1 |
|
|
| Codon Bias |
0.029 |
| Codon Adaptation Index |
0.153 |
| Frequency of Optimal Codons |
0.450 |
| Hydropathicity of Protein |
-0.556 |
| Aromaticity Score |
0.079 |
|
