Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
17 |
4.3% |
| Arg[R] |
20 |
5.1% |
| Asn[N] |
27 |
6.9% |
| Asp[D] |
23 |
5.9% |
| Cys[C] |
3 |
0.8% |
| Gln[Q] |
17 |
4.3% |
| Glu[E] |
26 |
6.6% |
| Gly[G] |
23 |
5.9% |
| His[H] |
10 |
2.5% |
| Ile[I] |
24 |
6.1% |
| Leu[L] |
35 |
8.9% |
| Lys[K] |
30 |
7.6% |
| Met[M] |
5 |
1.3% |
| Phe[F] |
14 |
3.6% |
| Pro[P] |
16 |
4.1% |
| Ser[S] |
37 |
9.4% |
| Thr[T] |
22 |
5.6% |
| Trp[W] |
7 |
1.8% |
| Tyr[Y] |
10 |
2.5% |
| Val[V] |
27 |
6.9% |
| Total Length |
393 |
|
| Instability index (II) |
34.12 |
| This classifies the protein as stable |
|
| Carbon |
1967 |
| Hydrogen |
3110 |
| Nitrogen |
554 |
| Oxygen |
605 |
| Sulfur |
8 |
| Total number of atoms |
6244 |
| Formula = C1967H3110N554O605S8 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
53525 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
53400 M-1 cm-1 |
| assuming all Cys residues are reduced |
53400 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
53525 M-1 cm-1 |
|
|
| Codon Bias |
0.036 |
| Codon Adaptation Index |
0.136 |
| Frequency of Optimal Codons |
0.430 |
| Hydropathicity of Protein |
-0.566 |
| Aromaticity Score |
0.079 |
|
