Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
39 |
5.7% |
| Arg[R] |
21 |
3.1% |
| Asn[N] |
93 |
13.6% |
| Asp[D] |
49 |
7.2% |
| Cys[C] |
7 |
1.0% |
| Gln[Q] |
37 |
5.4% |
| Glu[E] |
12 |
1.8% |
| Gly[G] |
34 |
5.0% |
| His[H] |
36 |
5.3% |
| Ile[I] |
38 |
5.6% |
| Leu[L] |
34 |
5.0% |
| Lys[K] |
26 |
3.8% |
| Met[M] |
24 |
3.5% |
| Phe[F] |
10 |
1.5% |
| Pro[P] |
33 |
4.8% |
| Ser[S] |
88 |
12.9% |
| Thr[T] |
53 |
7.8% |
| Trp[W] |
2 |
0.3% |
| Tyr[Y] |
19 |
2.8% |
| Val[V] |
28 |
4.1% |
| Total Length |
683 |
|
| Instability index (II) |
45.39 |
| This classifies the protein as unstable |
|
| Carbon |
3133 |
| Hydrogen |
4916 |
| Nitrogen |
976 |
| Oxygen |
1096 |
| Sulfur |
31 |
| Total number of atoms |
10152 |
| Formula = C3133H4916N976O1096S31 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
39685 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
39310 M-1 cm-1 |
| assuming all Cys residues are reduced |
39310 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
39685 M-1 cm-1 |
|
|
| Codon Bias |
0.057 |
| Codon Adaptation Index |
0.163 |
| Frequency of Optimal Codons |
0.452 |
| Hydropathicity of Protein |
-0.880 |
| Aromaticity Score |
0.045 |
|
