Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
21 |
6.1% |
| Arg[R] |
7 |
2.0% |
| Asn[N] |
12 |
3.5% |
| Asp[D] |
4 |
1.2% |
| Cys[C] |
5 |
1.4% |
| Gln[Q] |
11 |
3.2% |
| Glu[E] |
12 |
3.5% |
| Gly[G] |
19 |
5.5% |
| His[H] |
10 |
2.9% |
| Ile[I] |
27 |
7.8% |
| Leu[L] |
44 |
12.8% |
| Lys[K] |
22 |
6.4% |
| Met[M] |
4 |
1.2% |
| Phe[F] |
26 |
7.5% |
| Pro[P] |
8 |
2.3% |
| Ser[S] |
30 |
8.7% |
| Thr[T] |
23 |
6.7% |
| Trp[W] |
8 |
2.3% |
| Tyr[Y] |
24 |
7.0% |
| Val[V] |
28 |
8.1% |
| Total Length |
345 |
|
| Instability index (II) |
34.71 |
| This classifies the protein as stable |
|
| Carbon |
1875 |
| Hydrogen |
2837 |
| Nitrogen |
439 |
| Oxygen |
478 |
| Sulfur |
9 |
| Total number of atoms |
5638 |
| Formula = C1875H2837N439O478S9 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
80010 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
79760 M-1 cm-1 |
| assuming all Cys residues are reduced |
79760 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
80010 M-1 cm-1 |
|
|
| Codon Bias |
0.490 |
| Codon Adaptation Index |
0.372 |
| Frequency of Optimal Codons |
0.700 |
| Hydropathicity of Protein |
0.441 |
| Aromaticity Score |
0.168 |
|
