Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
77 |
9.4% |
| Arg[R] |
19 |
2.3% |
| Asn[N] |
35 |
4.3% |
| Asp[D] |
28 |
3.4% |
| Cys[C] |
0 |
0.0% |
| Gln[Q] |
21 |
2.6% |
| Glu[E] |
15 |
1.8% |
| Gly[G] |
45 |
5.5% |
| His[H] |
15 |
1.8% |
| Ile[I] |
33 |
4.0% |
| Leu[L] |
49 |
6.0% |
| Lys[K] |
47 |
5.8% |
| Met[M] |
13 |
1.6% |
| Phe[F] |
11 |
1.3% |
| Pro[P] |
183 |
22.4% |
| Ser[S] |
126 |
15.4% |
| Thr[T] |
52 |
6.4% |
| Trp[W] |
1 |
0.1% |
| Tyr[Y] |
3 |
0.4% |
| Val[V] |
44 |
5.4% |
| Total Length |
817 |
|
| Instability index (II) |
80.36 |
| This classifies the protein as unstable |
|
| Carbon |
3654 |
| Hydrogen |
5868 |
| Nitrogen |
1008 |
| Oxygen |
1141 |
| Sulfur |
13 |
| Total number of atoms |
11684 |
| Formula = C3654H5868N1008O1141S13 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
9970 M-1 cm-1 |
|
|
| Codon Bias |
0.075 |
| Codon Adaptation Index |
0.109 |
| Frequency of Optimal Codons |
0.406 |
| Hydropathicity of Protein |
-0.493 |
| Aromaticity Score |
0.018 |
|
