Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
42 |
7.0% |
| Arg[R] |
14 |
2.3% |
| Asn[N] |
27 |
4.5% |
| Asp[D] |
19 |
3.2% |
| Cys[C] |
13 |
2.2% |
| Gln[Q] |
9 |
1.5% |
| Glu[E] |
23 |
3.8% |
| Gly[G] |
50 |
8.4% |
| His[H] |
12 |
2.0% |
| Ile[I] |
44 |
7.4% |
| Leu[L] |
44 |
7.4% |
| Lys[K] |
26 |
4.3% |
| Met[M] |
20 |
3.3% |
| Phe[F] |
45 |
7.5% |
| Pro[P] |
20 |
3.3% |
| Ser[S] |
60 |
10.0% |
| Thr[T] |
40 |
6.7% |
| Trp[W] |
21 |
3.5% |
| Tyr[Y] |
31 |
5.2% |
| Val[V] |
38 |
6.4% |
| Total Length |
598 |
|
| Instability index (II) |
28.96 |
| This classifies the protein as stable |
|
| Carbon |
3094 |
| Hydrogen |
4585 |
| Nitrogen |
747 |
| Oxygen |
850 |
| Sulfur |
33 |
| Total number of atoms |
9309 |
| Formula = C3094H4585N747O850S33 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
162440 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
161690 M-1 cm-1 |
| assuming all Cys residues are reduced |
161690 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
162440 M-1 cm-1 |
|
|
| Codon Bias |
0.416 |
| Codon Adaptation Index |
0.330 |
| Frequency of Optimal Codons |
0.655 |
| Hydropathicity of Protein |
0.224 |
| Aromaticity Score |
0.162 |
|
