Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
14 |
3.2% |
| Arg[R] |
18 |
4.1% |
| Asn[N] |
23 |
5.2% |
| Asp[D] |
27 |
6.1% |
| Cys[C] |
3 |
0.7% |
| Gln[Q] |
19 |
4.3% |
| Glu[E] |
28 |
6.3% |
| Gly[G] |
29 |
6.5% |
| His[H] |
3 |
0.7% |
| Ile[I] |
28 |
6.3% |
| Leu[L] |
54 |
12.2% |
| Lys[K] |
48 |
10.8% |
| Met[M] |
18 |
4.1% |
| Phe[F] |
22 |
5.0% |
| Pro[P] |
13 |
2.9% |
| Ser[S] |
33 |
7.4% |
| Thr[T] |
27 |
6.1% |
| Trp[W] |
8 |
1.8% |
| Tyr[Y] |
11 |
2.5% |
| Val[V] |
18 |
4.1% |
| Total Length |
444 |
|
| Instability index (II) |
37.74 |
| This classifies the protein as stable |
|
| Carbon |
2287 |
| Hydrogen |
3656 |
| Nitrogen |
602 |
| Oxygen |
668 |
| Sulfur |
21 |
| Total number of atoms |
7234 |
| Formula = C2287H3656N602O668S21 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
60515 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
60390 M-1 cm-1 |
| assuming all Cys residues are reduced |
60390 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
60515 M-1 cm-1 |
|
|
| Codon Bias |
0.028 |
| Codon Adaptation Index |
0.111 |
| Frequency of Optimal Codons |
0.423 |
| Hydropathicity of Protein |
-0.408 |
| Aromaticity Score |
0.092 |
|
