Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
5 |
1.3% |
| Arg[R] |
20 |
5.2% |
| Asn[N] |
11 |
2.9% |
| Asp[D] |
30 |
7.9% |
| Cys[C] |
0 |
0.0% |
| Gln[Q] |
30 |
7.9% |
| Glu[E] |
25 |
6.6% |
| Gly[G] |
30 |
7.9% |
| His[H] |
5 |
1.3% |
| Ile[I] |
35 |
9.2% |
| Leu[L] |
45 |
11.8% |
| Lys[K] |
35 |
9.2% |
| Met[M] |
5 |
1.3% |
| Phe[F] |
10 |
2.6% |
| Pro[P] |
10 |
2.6% |
| Ser[S] |
25 |
6.6% |
| Thr[T] |
35 |
9.2% |
| Trp[W] |
0 |
0.0% |
| Tyr[Y] |
5 |
1.3% |
| Val[V] |
20 |
5.2% |
| Total Length |
381 |
|
| Instability index (II) |
30.11 |
| This classifies the protein as stable |
|
| Carbon |
1879 |
| Hydrogen |
3123 |
| Nitrogen |
527 |
| Oxygen |
598 |
| Sulfur |
5 |
| Total number of atoms |
6132 |
| Formula = C1879H3123N527O598S5 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
7450 M-1 cm-1 |
|
|
| Codon Bias |
0.466 |
| Codon Adaptation Index |
0.317 |
| Frequency of Optimal Codons |
0.689 |
| Hydropathicity of Protein |
-0.521 |
| Aromaticity Score |
0.039 |
|
