Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
48 |
6.4% |
| Arg[R] |
47 |
6.2% |
| Asn[N] |
35 |
4.7% |
| Asp[D] |
57 |
7.6% |
| Cys[C] |
1 |
0.1% |
| Gln[Q] |
25 |
3.3% |
| Glu[E] |
84 |
11.2% |
| Gly[G] |
46 |
6.1% |
| His[H] |
8 |
1.1% |
| Ile[I] |
46 |
6.1% |
| Leu[L] |
62 |
8.2% |
| Lys[K] |
81 |
10.8% |
| Met[M] |
20 |
2.7% |
| Phe[F] |
24 |
3.2% |
| Pro[P] |
23 |
3.1% |
| Ser[S] |
52 |
6.9% |
| Thr[T] |
34 |
4.5% |
| Trp[W] |
3 |
0.4% |
| Tyr[Y] |
9 |
1.2% |
| Val[V] |
47 |
6.2% |
| Total Length |
752 |
|
| Instability index (II) |
48.93 |
| This classifies the protein as unstable |
|
| Carbon |
3688 |
| Hydrogen |
6037 |
| Nitrogen |
1053 |
| Oxygen |
1190 |
| Sulfur |
21 |
| Total number of atoms |
11989 |
| Formula = C3688H6037N1053O1190S21 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
29910 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
29910 M-1 cm-1 |
| assuming all Cys residues are reduced |
29910 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
29910 M-1 cm-1 |
|
|
| Codon Bias |
0.228 |
| Codon Adaptation Index |
0.227 |
| Frequency of Optimal Codons |
0.543 |
| Hydropathicity of Protein |
-0.741 |
| Aromaticity Score |
0.048 |
|
