Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
16 |
4.0% |
| Arg[R] |
15 |
3.7% |
| Asn[N] |
21 |
5.2% |
| Asp[D] |
11 |
2.7% |
| Cys[C] |
6 |
1.5% |
| Gln[Q] |
13 |
3.2% |
| Glu[E] |
11 |
2.7% |
| Gly[G] |
26 |
6.5% |
| His[H] |
8 |
2.0% |
| Ile[I] |
30 |
7.4% |
| Leu[L] |
58 |
14.4% |
| Lys[K] |
18 |
4.5% |
| Met[M] |
7 |
1.7% |
| Phe[F] |
32 |
7.9% |
| Pro[P] |
13 |
3.2% |
| Ser[S] |
20 |
5.0% |
| Thr[T] |
28 |
6.9% |
| Trp[W] |
13 |
3.2% |
| Tyr[Y] |
30 |
7.4% |
| Val[V] |
27 |
6.7% |
| Total Length |
403 |
|
| Instability index (II) |
26.53 |
| This classifies the protein as stable |
|
| Carbon |
2248 |
| Hydrogen |
3353 |
| Nitrogen |
529 |
| Oxygen |
560 |
| Sulfur |
13 |
| Total number of atoms |
6703 |
| Formula = C2248H3353N529O560S13 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
116575 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
116200 M-1 cm-1 |
| assuming all Cys residues are reduced |
116200 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
116575 M-1 cm-1 |
|
|
| Codon Bias |
0.017 |
| Codon Adaptation Index |
0.108 |
| Frequency of Optimal Codons |
0.415 |
| Hydropathicity of Protein |
0.344 |
| Aromaticity Score |
0.186 |
|
