Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
39 |
5.3% |
| Arg[R] |
32 |
4.4% |
| Asn[N] |
43 |
5.9% |
| Asp[D] |
46 |
6.3% |
| Cys[C] |
17 |
2.3% |
| Gln[Q] |
37 |
5.0% |
| Glu[E] |
65 |
8.9% |
| Gly[G] |
28 |
3.8% |
| His[H] |
14 |
1.9% |
| Ile[I] |
50 |
6.8% |
| Leu[L] |
63 |
8.6% |
| Lys[K] |
91 |
12.4% |
| Met[M] |
12 |
1.6% |
| Phe[F] |
32 |
4.4% |
| Pro[P] |
29 |
4.0% |
| Ser[S] |
53 |
7.2% |
| Thr[T] |
29 |
4.0% |
| Trp[W] |
5 |
0.7% |
| Tyr[Y] |
20 |
2.7% |
| Val[V] |
28 |
3.8% |
| Total Length |
733 |
|
| Instability index (II) |
54.69 |
| This classifies the protein as unstable |
|
| Carbon |
3733 |
| Hydrogen |
5971 |
| Nitrogen |
1033 |
| Oxygen |
1138 |
| Sulfur |
29 |
| Total number of atoms |
11904 |
| Formula = C3733H5971N1033O1138S29 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
58300 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
57300 M-1 cm-1 |
| assuming all Cys residues are reduced |
57300 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
58300 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
