Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
31 |
5.8% |
| Arg[R] |
17 |
3.2% |
| Asn[N] |
39 |
7.3% |
| Asp[D] |
34 |
6.4% |
| Cys[C] |
6 |
1.1% |
| Gln[Q] |
19 |
3.6% |
| Glu[E] |
32 |
6.0% |
| Gly[G] |
31 |
5.8% |
| His[H] |
9 |
1.7% |
| Ile[I] |
32 |
6.0% |
| Leu[L] |
56 |
10.5% |
| Lys[K] |
40 |
7.5% |
| Met[M] |
11 |
2.1% |
| Phe[F] |
20 |
3.8% |
| Pro[P] |
25 |
4.7% |
| Ser[S] |
35 |
6.6% |
| Thr[T] |
29 |
5.4% |
| Trp[W] |
4 |
0.8% |
| Tyr[Y] |
21 |
3.9% |
| Val[V] |
42 |
7.9% |
| Total Length |
533 |
|
| Instability index (II) |
33.57 |
| This classifies the protein as stable |
|
| Carbon |
2668 |
| Hydrogen |
4214 |
| Nitrogen |
704 |
| Oxygen |
809 |
| Sulfur |
17 |
| Total number of atoms |
8412 |
| Formula = C2668H4214N704O809S17 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
53665 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
53290 M-1 cm-1 |
| assuming all Cys residues are reduced |
53290 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
53665 M-1 cm-1 |
|
|
| Codon Bias |
0.192 |
| Codon Adaptation Index |
0.175 |
| Frequency of Optimal Codons |
0.523 |
| Hydropathicity of Protein |
-0.274 |
| Aromaticity Score |
0.084 |
|
