Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
85 |
5.7% |
| Arg[R] |
96 |
6.4% |
| Asn[N] |
88 |
5.9% |
| Asp[D] |
82 |
5.5% |
| Cys[C] |
17 |
1.1% |
| Gln[Q] |
65 |
4.3% |
| Glu[E] |
83 |
5.5% |
| Gly[G] |
53 |
3.5% |
| His[H] |
43 |
2.9% |
| Ile[I] |
106 |
7.1% |
| Leu[L] |
146 |
9.7% |
| Lys[K] |
107 |
7.1% |
| Met[M] |
28 |
1.9% |
| Phe[F] |
61 |
4.1% |
| Pro[P] |
89 |
5.9% |
| Ser[S] |
89 |
5.9% |
| Thr[T] |
114 |
7.6% |
| Trp[W] |
11 |
0.7% |
| Tyr[Y] |
62 |
4.1% |
| Val[V] |
73 |
4.9% |
| Total Length |
1498 |
|
| Instability index (II) |
43.23 |
| This classifies the protein as unstable |
|
| Carbon |
7721 |
| Hydrogen |
12211 |
| Nitrogen |
2143 |
| Oxygen |
2247 |
| Sulfur |
45 |
| Total number of atoms |
24367 |
| Formula = C7721H12211N2143O2247S45 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
153880 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
152880 M-1 cm-1 |
| assuming all Cys residues are reduced |
152880 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
153880 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
