Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
21 |
5.1% |
| Arg[R] |
19 |
4.6% |
| Asn[N] |
23 |
5.6% |
| Asp[D] |
28 |
6.8% |
| Cys[C] |
5 |
1.2% |
| Gln[Q] |
14 |
3.4% |
| Glu[E] |
56 |
13.7% |
| Gly[G] |
14 |
3.4% |
| His[H] |
7 |
1.7% |
| Ile[I] |
25 |
6.1% |
| Leu[L] |
34 |
8.3% |
| Lys[K] |
46 |
11.2% |
| Met[M] |
4 |
1.0% |
| Phe[F] |
15 |
3.7% |
| Pro[P] |
16 |
3.9% |
| Ser[S] |
45 |
11.0% |
| Thr[T] |
8 |
2.0% |
| Trp[W] |
1 |
0.2% |
| Tyr[Y] |
14 |
3.4% |
| Val[V] |
15 |
3.7% |
| Total Length |
410 |
|
| Instability index (II) |
61.59 |
| This classifies the protein as unstable |
|
| Carbon |
2060 |
| Hydrogen |
3269 |
| Nitrogen |
565 |
| Oxygen |
683 |
| Sulfur |
9 |
| Total number of atoms |
6586 |
| Formula = C2060H3269N565O683S9 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
26610 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
26360 M-1 cm-1 |
| assuming all Cys residues are reduced |
26360 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
26610 M-1 cm-1 |
|
|
| Codon Bias |
0.115 |
| Codon Adaptation Index |
0.183 |
| Frequency of Optimal Codons |
0.484 |
| Hydropathicity of Protein |
-0.971 |
| Aromaticity Score |
0.073 |
|
