Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
38 |
4.1% |
| Arg[R] |
48 |
5.2% |
| Asn[N] |
76 |
8.2% |
| Asp[D] |
60 |
6.5% |
| Cys[C] |
9 |
1.0% |
| Gln[Q] |
34 |
3.7% |
| Glu[E] |
63 |
6.8% |
| Gly[G] |
29 |
3.1% |
| His[H] |
19 |
2.0% |
| Ile[I] |
63 |
6.8% |
| Leu[L] |
74 |
8.0% |
| Lys[K] |
65 |
7.0% |
| Met[M] |
19 |
2.0% |
| Phe[F] |
41 |
4.4% |
| Pro[P] |
74 |
8.0% |
| Ser[S] |
73 |
7.9% |
| Thr[T] |
58 |
6.2% |
| Trp[W] |
8 |
0.9% |
| Tyr[Y] |
36 |
3.9% |
| Val[V] |
41 |
4.4% |
| Total Length |
928 |
|
| Instability index (II) |
50.55 |
| This classifies the protein as unstable |
|
| Carbon |
4744 |
| Hydrogen |
7391 |
| Nitrogen |
1293 |
| Oxygen |
1452 |
| Sulfur |
28 |
| Total number of atoms |
14908 |
| Formula = C4744H7391N1293O1452S28 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
98140 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
97640 M-1 cm-1 |
| assuming all Cys residues are reduced |
97640 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
98140 M-1 cm-1 |
|
|
| Codon Bias |
-0.004 |
| Codon Adaptation Index |
0.133 |
| Frequency of Optimal Codons |
0.412 |
| Hydropathicity of Protein |
-0.701 |
| Aromaticity Score |
0.092 |
|
