Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
10 |
3.6% |
| Arg[R] |
18 |
6.5% |
| Asn[N] |
31 |
11.2% |
| Asp[D] |
1 |
0.4% |
| Cys[C] |
0 |
0.0% |
| Gln[Q] |
15 |
5.4% |
| Glu[E] |
16 |
5.8% |
| Gly[G] |
15 |
5.4% |
| His[H] |
8 |
2.9% |
| Ile[I] |
21 |
7.6% |
| Leu[L] |
15 |
5.4% |
| Lys[K] |
16 |
5.8% |
| Met[M] |
5 |
1.8% |
| Phe[F] |
11 |
4.0% |
| Pro[P] |
24 |
8.7% |
| Ser[S] |
27 |
9.8% |
| Thr[T] |
15 |
5.4% |
| Trp[W] |
2 |
0.7% |
| Tyr[Y] |
9 |
3.3% |
| Val[V] |
17 |
6.2% |
| Total Length |
276 |
|
| Instability index (II) |
56.64 |
| This classifies the protein as unstable |
|
| Carbon |
1384 |
| Hydrogen |
2186 |
| Nitrogen |
410 |
| Oxygen |
408 |
| Sulfur |
5 |
| Total number of atoms |
4393 |
| Formula = C1384H2186N410O408S5 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
|
|
| Codon Bias |
0.030 |
| Codon Adaptation Index |
0.103 |
| Frequency of Optimal Codons |
0.428 |
| Hydropathicity of Protein |
-0.718 |
| Aromaticity Score |
0.080 |
|
