Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
26 |
3.2% |
| Arg[R] |
21 |
2.6% |
| Asn[N] |
46 |
5.7% |
| Asp[D] |
40 |
5.0% |
| Cys[C] |
8 |
1.0% |
| Gln[Q] |
30 |
3.7% |
| Glu[E] |
46 |
5.7% |
| Gly[G] |
26 |
3.2% |
| His[H] |
13 |
1.6% |
| Ile[I] |
54 |
6.7% |
| Leu[L] |
92 |
11.4% |
| Lys[K] |
69 |
8.6% |
| Met[M] |
15 |
1.9% |
| Phe[F] |
46 |
5.7% |
| Pro[P] |
50 |
6.2% |
| Ser[S] |
89 |
11.1% |
| Thr[T] |
56 |
7.0% |
| Trp[W] |
6 |
0.7% |
| Tyr[Y] |
25 |
3.1% |
| Val[V] |
46 |
5.7% |
| Total Length |
804 |
|
| Instability index (II) |
46.68 |
| This classifies the protein as unstable |
|
| Carbon |
4123 |
| Hydrogen |
6500 |
| Nitrogen |
1044 |
| Oxygen |
1223 |
| Sulfur |
23 |
| Total number of atoms |
12913 |
| Formula = C4123H6500N1044O1223S23 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming all Cys residues are reduced |
70250 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
70750 M-1 cm-1 |
|
|
| Codon Bias |
0.073 |
| Codon Adaptation Index |
0.156 |
| Frequency of Optimal Codons |
0.455 |
| Hydropathicity of Protein |
-0.250 |
| Aromaticity Score |
0.096 |
|
