Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
33 |
6.3% |
| Arg[R] |
20 |
3.8% |
| Asn[N] |
20 |
3.8% |
| Asp[D] |
32 |
6.1% |
| Cys[C] |
3 |
0.6% |
| Gln[Q] |
23 |
4.4% |
| Glu[E] |
44 |
8.4% |
| Gly[G] |
29 |
5.5% |
| His[H] |
11 |
2.1% |
| Ile[I] |
27 |
5.2% |
| Leu[L] |
49 |
9.4% |
| Lys[K] |
69 |
13.2% |
| Met[M] |
6 |
1.1% |
| Phe[F] |
17 |
3.3% |
| Pro[P] |
22 |
4.2% |
| Ser[S] |
30 |
5.7% |
| Thr[T] |
31 |
5.9% |
| Trp[W] |
2 |
0.4% |
| Tyr[Y] |
13 |
2.5% |
| Val[V] |
42 |
8.0% |
| Total Length |
523 |
|
| Instability index (II) |
27.04 |
| This classifies the protein as stable |
|
| Carbon |
2621 |
| Hydrogen |
4265 |
| Nitrogen |
719 |
| Oxygen |
793 |
| Sulfur |
9 |
| Total number of atoms |
8407 |
| Formula = C2621H4265N719O793S9 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming all Cys residues are reduced |
30370 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
30495 M-1 cm-1 |
|
|
| Codon Bias |
0.311 |
| Codon Adaptation Index |
0.271 |
| Frequency of Optimal Codons |
0.596 |
| Hydropathicity of Protein |
-0.597 |
| Aromaticity Score |
0.061 |
|
