Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
17 |
5.7% |
| Arg[R] |
10 |
3.4% |
| Asn[N] |
35 |
11.8% |
| Asp[D] |
15 |
5.1% |
| Cys[C] |
4 |
1.4% |
| Gln[Q] |
24 |
8.1% |
| Glu[E] |
17 |
5.7% |
| Gly[G] |
18 |
6.1% |
| His[H] |
1 |
0.3% |
| Ile[I] |
14 |
4.7% |
| Leu[L] |
30 |
10.1% |
| Lys[K] |
15 |
5.1% |
| Met[M] |
7 |
2.4% |
| Phe[F] |
12 |
4.1% |
| Pro[P] |
16 |
5.4% |
| Ser[S] |
27 |
9.1% |
| Thr[T] |
8 |
2.7% |
| Trp[W] |
2 |
0.7% |
| Tyr[Y] |
6 |
2.0% |
| Val[V] |
18 |
6.1% |
| Total Length |
296 |
|
| Instability index (II) |
41.31 |
| This classifies the protein as unstable |
|
| Carbon |
1426 |
| Hydrogen |
2258 |
| Nitrogen |
404 |
| Oxygen |
461 |
| Sulfur |
11 |
| Total number of atoms |
4560 |
| Formula = C1426H2258N404O461S11 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming all Cys residues are reduced |
19940 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
20190 M-1 cm-1 |
|
|
| Codon Bias |
-0.036 |
| Codon Adaptation Index |
0.097 |
| Frequency of Optimal Codons |
0.380 |
| Hydropathicity of Protein |
-0.523 |
| Aromaticity Score |
0.068 |
|
