Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
9 |
4.2% |
| Arg[R] |
7 |
3.2% |
| Asn[N] |
9 |
4.2% |
| Asp[D] |
21 |
9.7% |
| Cys[C] |
2 |
0.9% |
| Gln[Q] |
6 |
2.8% |
| Glu[E] |
12 |
5.6% |
| Gly[G] |
8 |
3.7% |
| His[H] |
12 |
5.6% |
| Ile[I] |
16 |
7.4% |
| Leu[L] |
14 |
6.5% |
| Lys[K] |
18 |
8.3% |
| Met[M] |
5 |
2.3% |
| Phe[F] |
5 |
2.3% |
| Pro[P] |
10 |
4.6% |
| Ser[S] |
12 |
5.6% |
| Thr[T] |
15 |
6.9% |
| Trp[W] |
5 |
2.3% |
| Tyr[Y] |
10 |
4.6% |
| Val[V] |
20 |
9.3% |
| Total Length |
216 |
|
| Instability index (II) |
27.12 |
| This classifies the protein as stable |
|
| Carbon |
1122 |
| Hydrogen |
1731 |
| Nitrogen |
299 |
| Oxygen |
335 |
| Sulfur |
7 |
| Total number of atoms |
3494 |
| Formula = C1122H1731N299O335S7 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming all Cys residues are reduced |
42400 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
42525 M-1 cm-1 |
|
|
| Codon Bias |
0.319 |
| Codon Adaptation Index |
0.319 |
| Frequency of Optimal Codons |
0.617 |
| Hydropathicity of Protein |
-0.514 |
| Aromaticity Score |
0.093 |
|
