Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
27 |
5.6% |
| Arg[R] |
10 |
2.1% |
| Asn[N] |
27 |
5.6% |
| Asp[D] |
34 |
7.1% |
| Cys[C] |
3 |
0.6% |
| Gln[Q] |
11 |
2.3% |
| Glu[E] |
64 |
13.3% |
| Gly[G] |
29 |
6.0% |
| His[H] |
13 |
2.7% |
| Ile[I] |
37 |
7.7% |
| Leu[L] |
19 |
4.0% |
| Lys[K] |
33 |
6.9% |
| Met[M] |
9 |
1.9% |
| Phe[F] |
23 |
4.8% |
| Pro[P] |
18 |
3.7% |
| Ser[S] |
41 |
8.5% |
| Thr[T] |
28 |
5.8% |
| Trp[W] |
8 |
1.7% |
| Tyr[Y] |
16 |
3.3% |
| Val[V] |
31 |
6.4% |
| Total Length |
481 |
|
| Instability index (II) |
49.60 |
| This classifies the protein as unstable |
|
| Carbon |
2403 |
| Hydrogen |
3648 |
| Nitrogen |
616 |
| Oxygen |
801 |
| Sulfur |
12 |
| Total number of atoms |
7480 |
| Formula = C2403H3648N616O801S12 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
67965 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
67840 M-1 cm-1 |
| assuming all Cys residues are reduced |
67840 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
67965 M-1 cm-1 |
|
|
| Codon Bias |
0.241 |
| Codon Adaptation Index |
0.254 |
| Frequency of Optimal Codons |
0.573 |
| Hydropathicity of Protein |
-0.635 |
| Aromaticity Score |
0.098 |
|
