Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
38 |
7.1% |
| Arg[R] |
28 |
5.2% |
| Asn[N] |
57 |
10.6% |
| Asp[D] |
18 |
3.3% |
| Cys[C] |
2 |
0.4% |
| Gln[Q] |
76 |
14.1% |
| Glu[E] |
33 |
6.1% |
| Gly[G] |
18 |
3.3% |
| His[H] |
5 |
0.9% |
| Ile[I] |
25 |
4.6% |
| Leu[L] |
34 |
6.3% |
| Lys[K] |
39 |
7.2% |
| Met[M] |
9 |
1.7% |
| Phe[F] |
10 |
1.9% |
| Pro[P] |
22 |
4.1% |
| Ser[S] |
42 |
7.8% |
| Thr[T] |
43 |
8.0% |
| Trp[W] |
4 |
0.7% |
| Tyr[Y] |
11 |
2.0% |
| Val[V] |
25 |
4.6% |
| Total Length |
539 |
|
| Instability index (II) |
54.99 |
| This classifies the protein as unstable |
|
| Carbon |
2598 |
| Hydrogen |
4215 |
| Nitrogen |
809 |
| Oxygen |
871 |
| Sulfur |
11 |
| Total number of atoms |
8504 |
| Formula = C2598H4215N809O871S11 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
38515 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
38390 M-1 cm-1 |
| assuming all Cys residues are reduced |
38390 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
38515 M-1 cm-1 |
|
|
| Codon Bias |
0.029 |
| Codon Adaptation Index |
0.115 |
| Frequency of Optimal Codons |
0.435 |
| Hydropathicity of Protein |
-1.107 |
| Aromaticity Score |
0.046 |
|
