Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
48 |
5.2% |
| Arg[R] |
45 |
4.9% |
| Asn[N] |
49 |
5.3% |
| Asp[D] |
58 |
6.3% |
| Cys[C] |
20 |
2.2% |
| Gln[Q] |
43 |
4.7% |
| Glu[E] |
59 |
6.4% |
| Gly[G] |
31 |
3.4% |
| His[H] |
21 |
2.3% |
| Ile[I] |
64 |
6.9% |
| Leu[L] |
89 |
9.6% |
| Lys[K] |
62 |
6.7% |
| Met[M] |
14 |
1.5% |
| Phe[F] |
51 |
5.5% |
| Pro[P] |
47 |
5.1% |
| Ser[S] |
97 |
10.5% |
| Thr[T] |
48 |
5.2% |
| Trp[W] |
4 |
0.4% |
| Tyr[Y] |
28 |
3.0% |
| Val[V] |
46 |
5.0% |
| Total Length |
924 |
|
| Instability index (II) |
48.71 |
| This classifies the protein as unstable |
|
| Carbon |
4663 |
| Hydrogen |
7331 |
| Nitrogen |
1259 |
| Oxygen |
1424 |
| Sulfur |
34 |
| Total number of atoms |
14711 |
| Formula = C4663H7331N1259O1424S34 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
64970 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
63720 M-1 cm-1 |
| assuming all Cys residues are reduced |
63720 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
64970 M-1 cm-1 |
|
|
| Codon Bias |
-0.025 |
| Codon Adaptation Index |
0.103 |
| Frequency of Optimal Codons |
0.395 |
| Hydropathicity of Protein |
-0.386 |
| Aromaticity Score |
0.090 |
|
