Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
58 |
10.2% |
| Arg[R] |
12 |
2.1% |
| Asn[N] |
19 |
3.3% |
| Asp[D] |
25 |
4.4% |
| Cys[C] |
14 |
2.5% |
| Gln[Q] |
18 |
3.2% |
| Glu[E] |
16 |
2.8% |
| Gly[G] |
54 |
9.5% |
| His[H] |
5 |
0.9% |
| Ile[I] |
59 |
10.3% |
| Leu[L] |
53 |
9.3% |
| Lys[K] |
27 |
4.7% |
| Met[M] |
14 |
2.5% |
| Phe[F] |
32 |
5.6% |
| Pro[P] |
18 |
3.2% |
| Ser[S] |
48 |
8.4% |
| Thr[T] |
26 |
4.6% |
| Trp[W] |
14 |
2.5% |
| Tyr[Y] |
24 |
4.2% |
| Val[V] |
35 |
6.1% |
| Total Length |
571 |
|
| Instability index (II) |
36.58 |
| This classifies the protein as stable |
|
| Carbon |
2847 |
| Hydrogen |
4387 |
| Nitrogen |
695 |
| Oxygen |
789 |
| Sulfur |
28 |
| Total number of atoms |
8746 |
| Formula = C2847H4387N695O789S28 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
113635 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
112760 M-1 cm-1 |
| assuming all Cys residues are reduced |
112760 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
113635 M-1 cm-1 |
|
|
| Codon Bias |
0.253 |
| Codon Adaptation Index |
0.223 |
| Frequency of Optimal Codons |
0.554 |
| Hydropathicity of Protein |
0.474 |
| Aromaticity Score |
0.123 |
|
