Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
26 |
4.9% |
| Arg[R] |
20 |
3.8% |
| Asn[N] |
32 |
6.0% |
| Asp[D] |
29 |
5.5% |
| Cys[C] |
3 |
0.6% |
| Gln[Q] |
15 |
2.8% |
| Glu[E] |
39 |
7.4% |
| Gly[G] |
42 |
7.9% |
| His[H] |
11 |
2.1% |
| Ile[I] |
27 |
5.1% |
| Leu[L] |
55 |
10.4% |
| Lys[K] |
39 |
7.4% |
| Met[M] |
13 |
2.5% |
| Phe[F] |
20 |
3.8% |
| Pro[P] |
20 |
3.8% |
| Ser[S] |
46 |
8.7% |
| Thr[T] |
17 |
3.2% |
| Trp[W] |
3 |
0.6% |
| Tyr[Y] |
27 |
5.1% |
| Val[V] |
46 |
8.7% |
| Total Length |
530 |
|
| Instability index (II) |
42.85 |
| This classifies the protein as unstable |
|
| Carbon |
2654 |
| Hydrogen |
4163 |
| Nitrogen |
701 |
| Oxygen |
804 |
| Sulfur |
16 |
| Total number of atoms |
8338 |
| Formula = C2654H4163N701O804S16 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
56855 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
56730 M-1 cm-1 |
| assuming all Cys residues are reduced |
56730 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
56855 M-1 cm-1 |
|
|
| Codon Bias |
0.154 |
| Codon Adaptation Index |
0.193 |
| Frequency of Optimal Codons |
0.494 |
| Hydropathicity of Protein |
-0.295 |
| Aromaticity Score |
0.094 |
|
