Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
39 |
6.6% |
| Arg[R] |
24 |
4.1% |
| Asn[N] |
30 |
5.1% |
| Asp[D] |
45 |
7.7% |
| Cys[C] |
12 |
2.0% |
| Gln[Q] |
12 |
2.0% |
| Glu[E] |
34 |
5.8% |
| Gly[G] |
36 |
6.1% |
| His[H] |
16 |
2.7% |
| Ile[I] |
35 |
6.0% |
| Leu[L] |
50 |
8.5% |
| Lys[K] |
50 |
8.5% |
| Met[M] |
15 |
2.6% |
| Phe[F] |
19 |
3.2% |
| Pro[P] |
28 |
4.8% |
| Ser[S] |
41 |
7.0% |
| Thr[T] |
38 |
6.5% |
| Trp[W] |
7 |
1.2% |
| Tyr[Y] |
15 |
2.6% |
| Val[V] |
41 |
7.0% |
| Total Length |
587 |
|
| Instability index (II) |
27.74 |
| This classifies the protein as stable |
|
| Carbon |
2883 |
| Hydrogen |
4586 |
| Nitrogen |
790 |
| Oxygen |
882 |
| Sulfur |
27 |
| Total number of atoms |
9168 |
| Formula = C2883H4586N790O882S27 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
61600 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
60850 M-1 cm-1 |
| assuming all Cys residues are reduced |
60850 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
61600 M-1 cm-1 |
|
|
| Codon Bias |
0.251 |
| Codon Adaptation Index |
0.202 |
| Frequency of Optimal Codons |
0.558 |
| Hydropathicity of Protein |
-0.376 |
| Aromaticity Score |
0.070 |
|
