Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
58 |
5.3% |
| Arg[R] |
56 |
5.1% |
| Asn[N] |
62 |
5.7% |
| Asp[D] |
70 |
6.4% |
| Cys[C] |
20 |
1.8% |
| Gln[Q] |
40 |
3.6% |
| Glu[E] |
64 |
5.8% |
| Gly[G] |
59 |
5.4% |
| His[H] |
19 |
1.7% |
| Ile[I] |
79 |
7.2% |
| Leu[L] |
96 |
8.8% |
| Lys[K] |
84 |
7.7% |
| Met[M] |
26 |
2.4% |
| Phe[F] |
44 |
4.0% |
| Pro[P] |
44 |
4.0% |
| Ser[S] |
79 |
7.2% |
| Thr[T] |
60 |
5.5% |
| Trp[W] |
9 |
0.8% |
| Tyr[Y] |
49 |
4.5% |
| Val[V] |
79 |
7.2% |
| Total Length |
1097 |
|
| Instability index (II) |
38.27 |
| This classifies the protein as stable |
|
| Carbon |
5562 |
| Hydrogen |
8792 |
| Nitrogen |
1498 |
| Oxygen |
1656 |
| Sulfur |
46 |
| Total number of atoms |
17554 |
| Formula = C5562H8792N1498O1656S46 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
123760 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
122510 M-1 cm-1 |
| assuming all Cys residues are reduced |
122510 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
123760 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
