Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
5 |
2.2% |
| Arg[R] |
13 |
5.7% |
| Asn[N] |
24 |
10.5% |
| Asp[D] |
7 |
3.1% |
| Cys[C] |
2 |
0.9% |
| Gln[Q] |
5 |
2.2% |
| Glu[E] |
12 |
5.2% |
| Gly[G] |
8 |
3.5% |
| His[H] |
4 |
1.7% |
| Ile[I] |
26 |
11.4% |
| Leu[L] |
27 |
11.8% |
| Lys[K] |
22 |
9.6% |
| Met[M] |
7 |
3.1% |
| Phe[F] |
9 |
3.9% |
| Pro[P] |
7 |
3.1% |
| Ser[S] |
13 |
5.7% |
| Thr[T] |
20 |
8.7% |
| Trp[W] |
2 |
0.9% |
| Tyr[Y] |
6 |
2.6% |
| Val[V] |
10 |
4.4% |
| Total Length |
229 |
|
| Instability index (II) |
28.72 |
| This classifies the protein as stable |
|
| Carbon |
1194 |
| Hydrogen |
1957 |
| Nitrogen |
329 |
| Oxygen |
336 |
| Sulfur |
9 |
| Total number of atoms |
3825 |
| Formula = C1194H1957N329O336S9 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
20065 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
19940 M-1 cm-1 |
| assuming all Cys residues are reduced |
19940 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
20065 M-1 cm-1 |
|
|
| Codon Bias |
-0.015 |
| Codon Adaptation Index |
0.104 |
| Frequency of Optimal Codons |
0.418 |
| Hydropathicity of Protein |
-0.259 |
| Aromaticity Score |
0.074 |
|
