Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
18 |
4.2% |
| Arg[R] |
8 |
1.9% |
| Asn[N] |
90 |
20.9% |
| Asp[D] |
32 |
7.4% |
| Cys[C] |
1 |
0.2% |
| Gln[Q] |
26 |
6.0% |
| Glu[E] |
34 |
7.9% |
| Gly[G] |
24 |
5.6% |
| His[H] |
2 |
0.5% |
| Ile[I] |
13 |
3.0% |
| Leu[L] |
31 |
7.2% |
| Lys[K] |
27 |
6.3% |
| Met[M] |
9 |
2.1% |
| Phe[F] |
13 |
3.0% |
| Pro[P] |
9 |
2.1% |
| Ser[S] |
42 |
9.7% |
| Thr[T] |
30 |
7.0% |
| Trp[W] |
1 |
0.2% |
| Tyr[Y] |
6 |
1.4% |
| Val[V] |
15 |
3.5% |
| Total Length |
431 |
|
| Instability index (II) |
41.48 |
| This classifies the protein as unstable |
|
| Carbon |
1972 |
| Hydrogen |
3113 |
| Nitrogen |
603 |
| Oxygen |
758 |
| Sulfur |
10 |
| Total number of atoms |
6456 |
| Formula = C1972H3113N603O758S10 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
14440 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
14440 M-1 cm-1 |
| assuming all Cys residues are reduced |
14440 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
14440 M-1 cm-1 |
|
|
| Codon Bias |
0.100 |
| Codon Adaptation Index |
0.168 |
| Frequency of Optimal Codons |
0.485 |
| Hydropathicity of Protein |
-1.263 |
| Aromaticity Score |
0.046 |
|
