Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
80 |
4.6% |
| Arg[R] |
75 |
4.3% |
| Asn[N] |
117 |
6.7% |
| Asp[D] |
104 |
5.9% |
| Cys[C] |
17 |
1.0% |
| Gln[Q] |
81 |
4.6% |
| Glu[E] |
88 |
5.0% |
| Gly[G] |
66 |
3.8% |
| His[H] |
63 |
3.6% |
| Ile[I] |
126 |
7.2% |
| Leu[L] |
146 |
8.3% |
| Lys[K] |
125 |
7.1% |
| Met[M] |
33 |
1.9% |
| Phe[F] |
52 |
3.0% |
| Pro[P] |
110 |
6.3% |
| Ser[S] |
178 |
10.1% |
| Thr[T] |
133 |
7.6% |
| Trp[W] |
14 |
0.8% |
| Tyr[Y] |
74 |
4.2% |
| Val[V] |
73 |
4.2% |
| Total Length |
1755 |
|
| Instability index (II) |
49.02 |
| This classifies the protein as unstable |
|
| Carbon |
8796 |
| Hydrogen |
13823 |
| Nitrogen |
2443 |
| Oxygen |
2723 |
| Sulfur |
50 |
| Total number of atoms |
27835 |
| Formula = C8796H13823N2443O2723S50 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
188260 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
187260 M-1 cm-1 |
| assuming all Cys residues are reduced |
187260 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
188260 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
