Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
25 |
7.4% |
| Arg[R] |
13 |
3.8% |
| Asn[N] |
9 |
2.6% |
| Asp[D] |
21 |
6.2% |
| Cys[C] |
4 |
1.2% |
| Gln[Q] |
6 |
1.8% |
| Glu[E] |
20 |
5.9% |
| Gly[G] |
36 |
10.6% |
| His[H] |
9 |
2.6% |
| Ile[I] |
18 |
5.3% |
| Leu[L] |
44 |
12.9% |
| Lys[K] |
21 |
6.2% |
| Met[M] |
9 |
2.6% |
| Phe[F] |
11 |
3.2% |
| Pro[P] |
14 |
4.1% |
| Ser[S] |
24 |
7.1% |
| Thr[T] |
22 |
6.5% |
| Trp[W] |
6 |
1.8% |
| Tyr[Y] |
9 |
2.6% |
| Val[V] |
19 |
5.6% |
| Total Length |
340 |
|
| Instability index (II) |
28.08 |
| This classifies the protein as stable |
|
| Carbon |
1655 |
| Hydrogen |
2619 |
| Nitrogen |
439 |
| Oxygen |
493 |
| Sulfur |
13 |
| Total number of atoms |
5219 |
| Formula = C1655H2619N439O493S13 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
46660 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
46410 M-1 cm-1 |
| assuming all Cys residues are reduced |
46410 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
46660 M-1 cm-1 |
|
|
| Codon Bias |
0.096 |
| Codon Adaptation Index |
0.140 |
| Frequency of Optimal Codons |
0.440 |
| Hydropathicity of Protein |
-0.067 |
| Aromaticity Score |
0.076 |
|
