Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
71 |
5.8% |
| Arg[R] |
39 |
3.2% |
| Asn[N] |
85 |
6.9% |
| Asp[D] |
104 |
8.4% |
| Cys[C] |
4 |
0.3% |
| Gln[Q] |
41 |
3.3% |
| Glu[E] |
215 |
17.4% |
| Gly[G] |
53 |
4.3% |
| His[H] |
15 |
1.2% |
| Ile[I] |
73 |
5.9% |
| Leu[L] |
59 |
4.8% |
| Lys[K] |
119 |
9.7% |
| Met[M] |
11 |
0.9% |
| Phe[F] |
20 |
1.6% |
| Pro[P] |
46 |
3.7% |
| Ser[S] |
97 |
7.9% |
| Thr[T] |
93 |
7.5% |
| Trp[W] |
2 |
0.2% |
| Tyr[Y] |
9 |
0.7% |
| Val[V] |
77 |
6.2% |
| Total Length |
1233 |
|
| Instability index (II) |
49.83 |
| This classifies the protein as unstable |
|
| Carbon |
5813 |
| Hydrogen |
9383 |
| Nitrogen |
1627 |
| Oxygen |
2197 |
| Sulfur |
15 |
| Total number of atoms |
19035 |
| Formula = C5813H9383N1627O2197S15 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
24660 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
24410 M-1 cm-1 |
| assuming all Cys residues are reduced |
24410 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
24660 M-1 cm-1 |
|
|
| Codon Bias |
0.070 |
| Codon Adaptation Index |
0.152 |
| Frequency of Optimal Codons |
0.475 |
| Hydropathicity of Protein |
-1.140 |
| Aromaticity Score |
0.025 |
|
